1. DILS 2004: Leipzig, Germany

Erhard Rahm (Ed.): Data Integration in the Life Sciences, First International Workshop, DILS 2004, Leipzig, Germany, March 25-26, 2004, Proceedings. Lecture Notes in Computer Science 2994 Springer 2004, ISBN 3-540-21300-7 BibTeX

Scientific and Clinical Workflows

Shawn Bowers, Bertram Ludäscher:
An Ontology-Driven Framework for Data Transformation in Scientific Workflows. 1-16
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Alexander Kozlenkov, Michael Schroeder:
PROVA: Rule-Based Java-Scripting for a Bioinformatics Semantic Web. 17-30
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Stefan Jablonski, Rainer Lay, Christian Meiler, Sascha Müller:
Process Based Data Logistics: a Solution for Clinical Integration Problems. 31-46
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Ontologies and Taxonomies

Barbara Heller, Heinrich Herre, Kristin Lippoldt:
Domain-Specific Concepts and Ontological Reduction within a Data Dictionary Framework. 47-62
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Trevor Paterson, Jessie B. Kennedy, Martin R. Pullan, Alan Cannon, Kate Armstrong, Mark F. Watson, Cedric Raguenaud, Sarah M. McDonald, Gordon Russell:
A Universal Character Model and Ontology of Defined Terms for Taxonomic Description. 63-78
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Barry Smith, Jacob Köhler, Anand Kumar:
On the Application of Formal Principles to Life Science Data: a Case Study in the Gene Ontology. 79-94
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Indexing and Clustering

Ela Hunt, Evangelos Pafilis, Inga Tulloch, John Wilson:
Index-Driven XML Data Integration to Support Functional Genomics. 95-109
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Vladimir Filkov, Steven Skiena:
Heterogeneous Data Integration with the Consensus Clustering Formalism. 110-123
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Integration Tools and Systems

Werner Ceusters, Barry Smith, James Matthew Fielding:
LinkSuite™: Formally Robust Ontology-Based Data and Information Integration. 124-139
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Sören Balko, Matthias Lange, Roland Schnee, Uwe Scholz:
BioDataServer: an Applied Molecular Biological Data Integration Service. 140-155
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Kristian Rother, Heiko Müller, Silke Trißl, Ina Koch, Thomas Steinke, Robert Preissner, Cornelius Frömmel, Ulf Leser:
Columba: Multidimensional Data Integration of Protein Annotations. 156-171
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Integration Techniques

Zina Ben-Miled, Nianhua Li, Yang Liu, Yue He, Eric Lynch, Omran A. Bukhres:
On the Integration of a Large Number of Life Science Web Databases. 172-186
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Zoé Lacroix, Louiqa Raschid, Maria-Esther Vidal:
Efficient Techniques to Explore and Rank Paths in Life Science Data Sources. 187-202
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Zoé Lacroix, Hyma Murthy, Felix Naumann, Louiqa Raschid:
Links and Paths through Life Sciences Data Sources. 203-211
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Graham J. L. Kemp, Selpi:
Pathway and Protein Interaction Data: from XML to FDM Database. 212-219
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